PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24110.1.p
Common NameLOC100835071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 250aa    MW: 26883.1 Da    PI: 10.0669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-1675124255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Bradi5g24110.1.p  75 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 124
                       69*****99.**********732...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-3074133IPR001471AP2/ERF domain
PROSITE profilePS5103222.58975132IPR001471AP2/ERF domain
PfamPF008472.8E-1075124IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2175134IPR016177DNA-binding domain
SMARTSM003802.1E-3575138IPR001471AP2/ERF domain
CDDcd000182.04E-2575133No hitNo description
PRINTSPR003676.6E-127687IPR001471AP2/ERF domain
PRINTSPR003676.6E-12114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQGEYRSSSE DSAGSAASAA AAAAAAMAPL AAAAAAVSAK EEQVTVAVAP PPLLPLHHHH  60
HHQQQQQQMQ GQKRQYRGVR MRKWGKWVAE IREPHKRTRI WLGSYATPVA AARAYDTAVF  120
YLRGRSARLN FPDEISGLAP LSSSSPAPSD EADGALSAAS IRKKAIEVGS RVDALQTGMM  180
PVPAASVPQP TPPAAAHHRE RPLKPRTHSQ EEELLEQQQQ QKLQRTAWNG RAKNPDLNQA  240
PSPESSDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1472136267ATERF1
3gcc_A2e-1472136267ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610951e-81AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence.
GenBankAK0993331e-81AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence.
GenBankAL6066351e-81AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL7323351e-81AL732335.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete sequence.
GenBankAP0149601e-81AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-81CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580694.11e-179PREDICTED: ethylene-responsive transcription factor RAP2-1-like
TrEMBLI1J2M81e-179I1J2M8_BRADI; Uncharacterized protein
STRINGBRADI5G24110.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-40DREB and EAR motif protein 3